PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01430.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 213aa    MW: 24884.4 Da    PI: 10.0735
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01430.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57373.34.5e-2345129397
                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                              fqr+ws+e ei++L + +++     + ps d d f +fvk++++ k +k+ql  K+ rL+kK+k++v+k       sf k+h++k 
  Sme2.5_01430.1_g00012.1  45 FQRVWSKEEEIAILEAYLNY----PSRPSTDYDSFLNFVKGRLQEKTTKTQLQHKLTRLRKKYKRNVEK------RSFLKPHEEKL 120
                              9*******************....56799****************************************......9********** PP

                   DUF573  89 felskkiWg 97 
                              f+lsk+iWg
  Sme2.5_01430.1_g00012.1 121 FKLSKRIWG 129
                              ********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-2345129IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASINLSKKQ KSKCDDSDTE WRPSIESDDS DNHPTKKQKM ENVGFQRVWS KEEEIAILEA  60
YLNYPSRPST DYDSFLNFVK GRLQEKTTKT QLQHKLTRLR KKYKRNVEKR SFLKPHEEKL  120
FKLSKRIWGE QVKAKAKAKV EGSDLVLREG SAADLEDWFR RNPGQLISDK DREEMLEKLQ  180
SVKIGKARQY LSEIQVMEEQ AKLAIHALQA TLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561813.12e-76PREDICTED: uncharacterized protein LOC107860847
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-12DNA-binding storekeeper protein-related transcriptional regulator